nipoppy.cli.options

Define shared Click options for the Nipoppy CLI.

Module Contents

nipoppy.cli.options.assume_yes_option(func)

Define assume-yes option for the CLI.

nipoppy.cli.options.dataset_option(func)

Define dataset options for the CLI.

It is separated from global_options to allow for a different ordering when printing the –help.

nipoppy.cli.options.dep_params(**params)

Handle deprecated parameters.

nipoppy.cli.options.global_options(func)

Define global options (no layout) for the CLI.

nipoppy.cli.options.layout_option(func)

Define layout option for the CLI.

nipoppy.cli.options.pipeline_options(func)

Define pipeline options for the CLI.

nipoppy.cli.options.runners_options(func)

Define options for the pipeline runner commands.